I'm going to need a source for that.
The closest thing (the only thing?) we have is the police saying this:
"A reasonable amount of time was given for both the tenant and property owner to fix the issues. Due to the safety of all involved the city moved forward with filing charges."
We know nothing from this statement. What is "a reasonable amount of time" and what "issues" needed to be "fixed"? The statement does not say, so we are left to speculate. I've seen nothing about the city saying the church hasn't applied for a zoning variance, nor that the issues would be resolved if they did. Unless you have a source that shows that, I'm going to have to say that's completely made up.
There is nothing in the article that makes me believe the church has done "nothing". In fact, the article from the OP says this:
"We hope Mayor Carrie Schlade will drop all of these charges and begin talking with us about how Pastor Chris and Dad’s Place will continue to contribute to the wonderful community of Bryan," he added.
So to me, it sounds like the church would like to work with the city, but the city has decided to go the route of filing charges instead.
The truth is, none of us know the specifics. You say it "sounds as if the church has done nothing", but the only reason to believe that is if you believe the statement from the police that says they were giving "a reasonable amount of time" to comply. But I want to know what "a reasonable amount of time" is and what exactly they needed to do and what it would cost to comply. I shared
earlier in the thread my personal experience with my local government giving me what they called "a reasonable amount of time" (i.e. 30 days) to come up with $2,500 to "fix" my cracked sidewalks. So obviously, that experience biases me to side with the people that are actually doing something to help people rather than prioritizing zoning violations.